WEB-based GEne SeT AnaLysis Toolkit
 
Translating gene lists into biological insights...
 


User data and parameters: User data: textAreaUpload.txt, Organism: hsapiens, Id Type: ensembl_gene_stable_id, Ref Set: entrezgene, Significance Level: Top10, Statistics Test: Hypergeometric, MTC: BH, Minimum: 2

The results for each enriched gene sets are listed in this table.
For each gene set, the first row lists database name, gene set name , and corresponding gene set ID. The second row lists the following statistics:
Finally, genes in the gene set are listed. For each gene, the table lists the user uploaded ID and value (optional), Entrez ID, Ensembl Gene Stable ID, Gene symbol, and description. Ensembl Gene Stable ID and Entrez Gene ID are linked to the Ensembl and Entrez Gene databases, respectively.

Database:Transcription Target       Name:hsa_V$E12_Q6       ID:DB_ID:2206
C=260; O=4; E=0.15; R=26.54; rawP=1.48e-05; adjP=0.0006
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000113645 NA WWC1 WW and C2 domain containing 1 23286 ENSG00000113645
2  ENSG00000132872 NA SYT4 synaptotagmin IV 6860 ENSG00000132872
3  ENSG00000128510 NA CPA4 carboxypeptidase A4 51200 ENSG00000128510
4  ENSG00000135127 NA CCDC64 coiled-coil domain containing 64 92558 ENSG00000135127


Database:Transcription Target       Name:hsa_V$PBX1_01       ID:DB_ID:1907
C=250; O=3; E=0.14; R=20.70; rawP=0.0004; adjP=0.0022
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000101443 NA WFDC2 WAP four-disulfide core domain 2 10406 ENSG00000101443
2  ENSG00000132872 NA SYT4 synaptotagmin IV 6860 ENSG00000132872
3  ENSG00000243649 NA CFB complement factor B 629 ENSG00000243649


Database:Transcription Target       Name:hsa_CAGGTG_V$E12_Q6       ID:DB_ID:2409
C=2450; O=7; E=1.42; R=4.93; rawP=0.0004; adjP=0.0022
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000113645 NA WWC1 WW and C2 domain containing 1 23286 ENSG00000113645
2  ENSG00000132872 NA SYT4 synaptotagmin IV 6860 ENSG00000132872
3  ENSG00000171345 NA KRT19 keratin 19 3880 ENSG00000171345
4  ENSG00000128510 NA CPA4 carboxypeptidase A4 51200 ENSG00000128510
5  ENSG00000131037 NA EPS8L1 EPS8-like 1 54869 ENSG00000131037
6  ENSG00000092295 NA TGM1 transglutaminase 1 (K polypeptide epidermal type I, protein-glutamine-gamma-glutamyltransferase) 7051 ENSG00000092295
7  ENSG00000135127 NA CCDC64 coiled-coil domain containing 64 92558 ENSG00000135127


Database:Transcription Target       Name:hsa_TGANTCA_V$AP1_C       ID:DB_ID:2402
C=1104; O=5; E=0.64; R=7.81; rawP=0.0004; adjP=0.0022
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000124920 NA C11orf9 chromosome 11 open reading frame 9 745 ENSG00000124920
2  ENSG00000171345 NA KRT19 keratin 19 3880 ENSG00000171345
3  ENSG00000128510 NA CPA4 carboxypeptidase A4 51200 ENSG00000128510
4  ENSG00000092295 NA TGM1 transglutaminase 1 (K polypeptide epidermal type I, protein-glutamine-gamma-glutamyltransferase) 7051 ENSG00000092295
5  ENSG00000135127 NA CCDC64 coiled-coil domain containing 64 92558 ENSG00000135127


Database:Transcription Target       Name:hsa_GCANCTGNY_V$MYOD_Q6       ID:DB_ID:2435
C=913; O=5; E=0.53; R=9.45; rawP=0.0002; adjP=0.0022
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000113645 NA WWC1 WW and C2 domain containing 1 23286 ENSG00000113645
2  ENSG00000132872 NA SYT4 synaptotagmin IV 6860 ENSG00000132872
3  ENSG00000171345 NA KRT19 keratin 19 3880 ENSG00000171345
4  ENSG00000092295 NA TGM1 transglutaminase 1 (K polypeptide epidermal type I, protein-glutamine-gamma-glutamyltransferase) 7051 ENSG00000092295
5  ENSG00000135127 NA CCDC64 coiled-coil domain containing 64 92558 ENSG00000135127


Database:Transcription Target       Name:hsa_V$HNF4_Q6       ID:DB_ID:2331
C=257; O=3; E=0.15; R=20.14; rawP=0.0004; adjP=0.0022
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000124107 NA SLPI secretory leukocyte peptidase inhibitor 6590 ENSG00000124107
2  ENSG00000143375 NA CGN cingulin 57530 ENSG00000143375
3  ENSG00000243649 NA CFB complement factor B 629 ENSG00000243649


Database:Transcription Target       Name:hsa_V$MYOD_Q6       ID:DB_ID:1973
C=244; O=3; E=0.14; R=21.21; rawP=0.0004; adjP=0.0022
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000113645 NA WWC1 WW and C2 domain containing 1 23286 ENSG00000113645
2  ENSG00000132872 NA SYT4 synaptotagmin IV 6860 ENSG00000132872
3  ENSG00000092295 NA TGM1 transglutaminase 1 (K polypeptide epidermal type I, protein-glutamine-gamma-glutamyltransferase) 7051 ENSG00000092295


Database:Transcription Target       Name:hsa_V$LMO2COM_01       ID:DB_ID:2034
C=260; O=3; E=0.15; R=19.90; rawP=0.0005; adjP=0.0024
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000113645 NA WWC1 WW and C2 domain containing 1 23286 ENSG00000113645
2  ENSG00000132872 NA SYT4 synaptotagmin IV 6860 ENSG00000132872
3  ENSG00000135127 NA CCDC64 coiled-coil domain containing 64 92558 ENSG00000135127


Database:Transcription Target       Name:hsa_CTTTGA_V$LEF1_Q2       ID:DB_ID:2427
C=1208; O=5; E=0.70; R=7.14; rawP=0.0006; adjP=0.0025
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000143375 NA CGN cingulin 57530 ENSG00000143375
2  ENSG00000243649 NA CFB complement factor B 629 ENSG00000243649
3  ENSG00000138821 NA SLC39A8 solute carrier family 39 (zinc transporter), member 8 64116 ENSG00000138821
4  ENSG00000074410 NA CA12 carbonic anhydrase XII 771 ENSG00000074410
5  ENSG00000092295 NA TGM1 transglutaminase 1 (K polypeptide epidermal type I, protein-glutamine-gamma-glutamyltransferase) 7051 ENSG00000092295


Database:Transcription Target       Name:hsa_GGGCGGR_V$SP1_Q6       ID:DB_ID:2452
C=2891; O=7; E=1.68; R=4.18; rawP=0.0010; adjP=0.0038
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000101443 NA WFDC2 WAP four-disulfide core domain 2 10406 ENSG00000101443
2  ENSG00000113645 NA WWC1 WW and C2 domain containing 1 23286 ENSG00000113645
3  ENSG00000163347 NA CLDN1 claudin 1 9076 ENSG00000163347
4  ENSG00000143375 NA CGN cingulin 57530 ENSG00000143375
5  ENSG00000171345 NA KRT19 keratin 19 3880 ENSG00000171345
6  ENSG00000131037 NA EPS8L1 EPS8-like 1 54869 ENSG00000131037
7  ENSG00000135127 NA CCDC64 coiled-coil domain containing 64 92558 ENSG00000135127




WebGestalt is currently developed and maintained by Jing Wang and Bing Zhang at the Zhang Lab. Other people who have made significant contribution to the project include Dexter Duncan, Stefan Kirov, Zhiao Shi, and Jay Snoddy.

Funding credits: NIH/NIAAA (U01 AA016662, U01 AA013512); NIH/NIDA (P01 DA015027); NIH/NIMH (P50 MH078028, P50 MH096972); NIH/NCI (U24 CA159988); NIH/NIGMS (R01 GM088822).